参考资料

🍎A general method applicable to the search for similarities in the amino acid sequence of two proteins

🍎 Identification of Common Molecular Subsequences

🍏.An improved algorithm for matching biological sequences

🍏Optimal alignment in linear space

🍎 Biological Sequence Analysis Chapter1 and Chapter 11

🍏Probability Theory: The logic of Science

🍏数学之美

🍎Introduction to Algorithms Chapter1 and Chapter 2

🍎Introduction to Algorithms Chapter15 and Chapter 16

🍎Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

🍏Basic Local Alignment Search Tool

🍏Amino Acid substitution matrices from an information theoretic perspective

🍏A protein alignment scoring system sensitive at all evolution distances

🍏Local alignment statistics

🍎A Tutorial on Hidden Markov Models and Selected Applications in Speech Recognition

🍏Fundamentals of Speech Recognition

🍏Prediction of complete gene structures in human genomic DNA

🍏Using ESTs to Improve the Accuracy of de novo Gene Prediction

🍏The Completion of the Mammalian Gene Collection (MGC)

🍏Closing in on the C.elegans ORFeome by Cloning TWINSCAN predictions

🍏Revealing missing human protein isoforms based on ab initio prediction, RNA-seq and proteomics

🍎Biological Sequence Analysis Chapter5 and Chapter 6

🍏CVTree: a phylogenetic tree reconstruction tool based on whole genomes

🍏Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms

🍏Phymm and PhymmBL: metagenomic phylogenic classification with interpolated Markov models

🍏PhymmBL expanded: confidence scores, custom databases, parallelization and more

🍎Assessing computational tools for the discovery of transcription factor binding sites